Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10028951	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12506376	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12649965	0.90[ASN][1000 genomes]
rs28804476	0.90[ASN][1000 genomes]
rs28888809	0.90[ASN][1000 genomes]
rs4269235	0.92[ASN][1000 genomes]
rs4274913	0.87[ASN][1000 genomes]
rs4328969	0.92[ASN][1000 genomes]
rs4346706	0.90[ASN][1000 genomes]
rs4463123	0.93[ASN][1000 genomes]
rs4495108	0.90[ASN][1000 genomes]
rs4634284	0.89[ASN][1000 genomes]
rs56201409	0.89[ASN][1000 genomes]
rs56316114	0.90[ASN][1000 genomes]
rs56384539	0.92[ASN][1000 genomes]
rs60585117	0.81[ASN][1000 genomes]
rs62306375	0.82[ASN][1000 genomes]
rs6821465	0.91[ASN][1000 genomes]
rs6832059	0.89[ASN][1000 genomes]
rs6835585	0.88[ASN][1000 genomes]
rs6842830	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55870800-55877400	Weak transcription	Fetal Lung	lung
2	chr4:55872800-55883000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:55873000-55883000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:55873600-55875400	Enhancers	HUVEC	blood vessel
5	chr4:55874600-55875400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:55874800-55879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:55875200-55875400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:55875200-55875400	Genic enhancers	Right Atrium	heart

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