Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10008166	0.94[ASN][1000 genomes]
rs12649965	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28804476	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28888809	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4269235	0.90[ASN][1000 genomes]
rs4274913	0.84[ASN][1000 genomes]
rs4328969	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4346706	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4463123	0.89[ASN][1000 genomes]
rs4495108	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4634284	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56201409	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56316114	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56384539	0.90[ASN][1000 genomes]
rs60585117	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6821465	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6832059	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6835585	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7655857	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7684211	0.89[ASN][1000 genomes]
rs7696684	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55828800-55829600	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:55828800-55829600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:55828800-55829800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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