Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10008166	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12649965	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28804476	0.86[ASN][1000 genomes]
rs28888809	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4269235	0.86[ASN][1000 genomes]
rs4274913	0.80[ASN][1000 genomes]
rs4328969	0.86[ASN][1000 genomes]
rs4346706	0.86[ASN][1000 genomes]
rs4463123	0.85[ASN][1000 genomes]
rs4495108	0.86[ASN][1000 genomes]
rs4634284	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56201409	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56316114	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56384539	0.86[ASN][1000 genomes]
rs60585117	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62306375	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6821465	0.87[ASN][1000 genomes]
rs6832059	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6835585	0.87[ASN][1000 genomes]
rs7684211	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55821200-55824400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:55821400-55824200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:55821400-55824200	Weak transcription	NHDF-Ad	bronchial
5	chr4:55821400-55824200	Weak transcription	NHLF	lung
6	chr4:55821400-55824400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:55821600-55824000	Weak transcription	Placenta	Placenta
8	chr4:55821600-55824600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:55822000-55825000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:55822400-55824200	Weak transcription	Fetal Heart	heart
11	chr4:55823800-55824800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:55823800-55827800	Enhancers	Primary T cells from cord blood	blood
13	chr4:55824000-55824600	Enhancers	Placenta	Placenta
14	chr4:55824000-55824800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:55824000-55825000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr4:55824000-55825000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:55824000-55825200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr4:55824000-55825400	Enhancers	Primary T helper cells fromperipheralblood	blood

Quick Search: