Variant report

Variant	rs10008166
Chromosome Location	chr4:55824521-55824522
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12649965	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs28804476	0.84[ASN][1000 genomes]
rs28888809	0.84[ASN][1000 genomes]
rs4269235	0.84[ASN][1000 genomes]
rs4328969	0.84[ASN][1000 genomes]
rs4346706	0.84[ASN][1000 genomes]
rs4463123	0.83[ASN][1000 genomes]
rs4495108	0.84[ASN][1000 genomes]
rs4634284	0.86[ASN][1000 genomes]
rs56201409	0.86[ASN][1000 genomes]
rs56316114	0.86[ASN][1000 genomes]
rs56384539	0.84[ASN][1000 genomes]
rs60585117	0.95[ASN][1000 genomes]
rs62306375	0.94[ASN][1000 genomes]
rs6821465	0.85[ASN][1000 genomes]
rs6832059	0.86[ASN][1000 genomes]
rs6835585	0.85[ASN][1000 genomes]
rs6842830	0.82[ASN][1000 genomes]
rs7655857	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7684211	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55821600-55824600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:55822000-55825000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:55823800-55824800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:55823800-55827800	Enhancers	Primary T cells from cord blood	blood
6	chr4:55824000-55824600	Enhancers	Placenta	Placenta
7	chr4:55824000-55824800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:55824000-55825000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:55824000-55825000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:55824000-55825200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr4:55824000-55825400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr4:55824200-55824800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr4:55824200-55824800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr4:55824200-55825000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:55824200-55825000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr4:55824200-55825000	Enhancers	Fetal Heart	heart
17	chr4:55824200-55825000	Enhancers	Fetal Thymus	thymus
18	chr4:55824200-55825200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr4:55824200-55825600	Enhancers	NHDF-Ad	bronchial
20	chr4:55824200-55826600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:55824200-55827200	Enhancers	NH-A	brain
22	chr4:55824200-55827600	Enhancers	NHLF	lung
23	chr4:55824200-55828000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:55824400-55824600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:55824400-55824800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:55824400-55826600	Enhancers	HSMMtube	muscle
27	chr4:55824400-55827600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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