Variant report

Variant	rs60585117
Chromosome Location	chr4:55826318-55826319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10008166	0.95[ASN][1000 genomes]
rs12649965	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28804476	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28888809	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4269235	0.88[ASN][1000 genomes]
rs4274913	0.83[ASN][1000 genomes]
rs4328969	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4346706	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4463123	0.88[ASN][1000 genomes]
rs4495108	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4634284	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56201409	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56316114	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56384539	0.88[ASN][1000 genomes]
rs62306375	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6821465	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6832059	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6835585	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7655857	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7684211	0.90[ASN][1000 genomes]
rs7696684	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv948758	chr4:55748430-55887962	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55817800-55836800	Weak transcription	Psoas Muscle	Psoas
2	chr4:55823800-55827800	Enhancers	Primary T cells from cord blood	blood
3	chr4:55824200-55826600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:55824200-55827200	Enhancers	NH-A	brain
5	chr4:55824200-55827600	Enhancers	NHLF	lung
6	chr4:55824200-55828000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:55824400-55826600	Enhancers	HSMMtube	muscle
8	chr4:55824400-55827600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:55824600-55826400	Enhancers	Osteobl	bone
10	chr4:55824600-55827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:55824600-55827200	Enhancers	HSMM	muscle
12	chr4:55824800-55826800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:55824800-55827000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:55825000-55827000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:55825000-55827000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:55825000-55827800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:55825400-55826600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:55825400-55827000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:55825600-55826400	Enhancers	Placenta	Placenta
20	chr4:55826200-55827200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:55826200-55827800	Enhancers	NHDF-Ad	bronchial

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