Variant report

Variant	rs7700036
Chromosome Location	chr4:62156415-62156416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11131319	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13143844	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1546379	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2047996	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4860408	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6835742	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73214579	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:62151400-62158600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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