Variant report

Variant	rs4860408
Chromosome Location	chr4:62151137-62151138
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11131319	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11737296	0.87[EUR][1000 genomes]
rs13143844	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394946	0.83[EUR][1000 genomes]
rs1505661	0.85[EUR][1000 genomes]
rs1546379	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2013068	0.82[EUR][1000 genomes]
rs2047996	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5008300	0.87[EUR][1000 genomes]
rs6835742	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214579	0.99[ASN][1000 genomes]
rs7700036	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9312075	0.83[EUR][1000 genomes]
rs954855	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62149400-62151200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:62149800-62151200	Weak transcription	Brain Substantia Nigra	brain
5	chr4:62150600-62151400	Enhancers	Brain Anterior Caudate	brain
6	chr4:62151000-62151200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr4:62151000-62151400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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