Variant report

Variant	rs954855
Chromosome Location	chr4:62151497-62151498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11131319	0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs11737296	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13143844	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1394946	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1505661	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505663	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1546379	0.88[EUR][1000 genomes]
rs2013068	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2047996	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2167076	0.81[JPT][hapmap]
rs4860408	0.87[EUR][1000 genomes]
rs5008300	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835742	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs73214542	0.82[ASN][1000 genomes]
rs7681067	0.85[ASN][1000 genomes]
rs9312075	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685980	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62149400-62158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:62151200-62151600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62151200-62151600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:62151200-62151600	Active TSS	Brain Substantia Nigra	brain
5	chr4:62151400-62151600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr4:62151400-62154600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:62151400-62158600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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