Variant report

Variant	rs1505663
Chromosome Location	chr4:62132090-62132091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11131319	0.86[JPT][hapmap]
rs11737296	0.85[ASN][1000 genomes]
rs1394946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1505661	0.85[ASN][1000 genomes]
rs1505667	0.89[ASN][1000 genomes]
rs1505673	0.89[ASN][1000 genomes]
rs1979111	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs2013068	0.82[ASN][1000 genomes]
rs2167076	0.82[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs5008300	0.85[ASN][1000 genomes]
rs57800374	0.83[ASN][1000 genomes]
rs60024238	0.89[ASN][1000 genomes]
rs66717947	0.93[ASN][1000 genomes]
rs67253259	0.93[ASN][1000 genomes]
rs67710116	0.93[ASN][1000 genomes]
rs6835742	0.86[JPT][hapmap]
rs73214533	0.88[ASN][1000 genomes]
rs73214542	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73214548	0.91[ASN][1000 genomes]
rs7681067	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685833	0.83[ASN][1000 genomes]
rs9312075	1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs954855	0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9685980	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128000-62133000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:62128400-62133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:62129200-62134000	Enhancers	Brain Anterior Caudate	brain
5	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:62129800-62133000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:62130200-62134800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:62130600-62134800	Weak transcription	Fetal Heart	heart
9	chr4:62130800-62134600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:62131000-62134200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:62131000-62134800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:62131200-62134000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:62131200-62134600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:62131200-62134600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:62131200-62135000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:62131200-62135000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:62131600-62133000	Weak transcription	Brain Substantia Nigra	brain
18	chr4:62131600-62133200	Weak transcription	Brain Angular Gyrus	brain
19	chr4:62132000-62132200	Enhancers	Brain Hippocampus Middle	brain
20	chr4:62132000-62133000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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