Variant report

Variant	rs57800374
Chromosome Location	chr4:62109501-62109502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1505663	0.83[ASN][1000 genomes]
rs1505667	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1505673	0.93[ASN][1000 genomes]
rs1979111	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2167076	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60024238	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66717947	0.89[ASN][1000 genomes]
rs67253259	0.89[ASN][1000 genomes]
rs67710116	0.89[ASN][1000 genomes]
rs73214533	0.92[ASN][1000 genomes]
rs73214542	0.85[ASN][1000 genomes]
rs73214548	0.90[ASN][1000 genomes]
rs7681067	0.83[ASN][1000 genomes]
rs7685833	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9685980	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879074	chr4:62000391-62109770	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62095200-62110800	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:62101600-62110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:62103800-62110200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:62103800-62110600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:62104000-62109600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:62105200-62110600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:62105200-62110800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:62105200-62111600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:62105400-62110600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:62105400-62110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:62105400-62112600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:62105800-62110400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:62105800-62110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:62106000-62110600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:62106000-62110800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:62107800-62110800	Weak transcription	Fetal Brain Female	brain
17	chr4:62108000-62109600	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:62108000-62110800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr4:62109000-62110800	Enhancers	Brain Substantia Nigra	brain
20	chr4:62109200-62111800	Enhancers	Fetal Kidney	kidney
21	chr4:62109400-62110600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links