Variant report

Variant	rs67710116
Chromosome Location	chr4:62130404-62130405
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1394946	0.80[ASN][1000 genomes]
rs1505663	0.93[ASN][1000 genomes]
rs1505667	0.96[ASN][1000 genomes]
rs1505673	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1979111	0.96[ASN][1000 genomes]
rs2167076	0.96[ASN][1000 genomes]
rs57800374	0.89[ASN][1000 genomes]
rs60024238	0.96[ASN][1000 genomes]
rs66717947	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67253259	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214533	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73214542	0.89[ASN][1000 genomes]
rs73214548	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7681067	0.93[ASN][1000 genomes]
rs7685833	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9312075	0.80[ASN][1000 genomes]
rs9685980	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128000-62131000	Weak transcription	Brain Angular Gyrus	brain
2	chr4:62128000-62133000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:62128400-62133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:62128600-62131000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:62128800-62130800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:62129200-62130600	Enhancers	Fetal Heart	heart
8	chr4:62129200-62131200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:62129200-62134000	Enhancers	Brain Anterior Caudate	brain
10	chr4:62129400-62131000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:62129400-62131200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:62129400-62131200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:62129400-62131200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:62129400-62131600	Enhancers	Brain Substantia Nigra	brain
15	chr4:62129600-62139000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:62129800-62130800	Enhancers	Fetal Lung	lung
17	chr4:62129800-62131200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:62129800-62132000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:62129800-62133000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:62130000-62130800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:62130000-62131000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:62130200-62130600	Enhancers	Brain Hippocampus Middle	brain
23	chr4:62130200-62134800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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