Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11131319	0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs11737296	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13143844	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1394946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505661	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1505663	1.00[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1546379	0.84[EUR][1000 genomes]
rs1979111	0.82[CHB][hapmap]
rs2013068	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2047996	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2167076	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs4860408	0.83[EUR][1000 genomes]
rs5008300	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66717947	0.80[ASN][1000 genomes]
rs67253259	0.80[ASN][1000 genomes]
rs67710116	0.80[ASN][1000 genomes]
rs6835742	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs73214542	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7681067	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs954855	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9685980	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62128200-62143600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr4:62136000-62151200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:62136200-62147200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:62141400-62151000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:62141600-62150600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:62142000-62143800	Weak transcription	Aorta	Aorta
7	chr4:62142000-62144400	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:62142200-62143400	Weak transcription	Brain Substantia Nigra	brain
9	chr4:62142200-62144000	Weak transcription	Brain Angular Gyrus	brain

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