Variant report

Variant	rs2047996
Chromosome Location	chr4:62160574-62160575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11131319	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11737296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs13143844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1394946	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1505661	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs1546379	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2013068	0.81[EUR][1000 genomes]
rs4860408	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5008300	0.86[EUR][1000 genomes]
rs6835742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73214579	0.93[ASN][1000 genomes]
rs7700036	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9312075	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs954855	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
2	chr4:62156600-62161600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:62158800-62161400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:62158800-62161400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62158800-62161600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:62159000-62160600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:62159000-62161800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:62159000-62164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:62159000-62167200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:62159600-62160800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:62159800-62160800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:62160000-62160800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:62160000-62161400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:62160200-62160800	Enhancers	Fetal Lung	lung
18	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:62160400-62160600	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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