Variant report

Variant	rs7702077
Chromosome Location	chr5:52826933-52826934
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10038283	0.93[EUR][1000 genomes]
rs10078892	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12515137	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12655541	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13177321	0.83[JPT][hapmap]
rs1532162	0.82[JPT][hapmap]
rs1582554	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1593054	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16881474	0.86[JPT][hapmap]
rs1844697	0.82[JPT][hapmap]
rs187658	0.82[JPT][hapmap]
rs189849	0.82[JPT][hapmap]
rs2124950	0.82[JPT][hapmap]
rs256081	0.83[JPT][hapmap]
rs256082	0.83[JPT][hapmap]
rs256093	0.83[JPT][hapmap]
rs256098	0.83[JPT][hapmap]
rs256111	0.82[JPT][hapmap]
rs256118	0.83[JPT][hapmap]
rs2607478	0.82[JPT][hapmap]
rs2607485	0.83[JPT][hapmap]
rs2607506	0.82[JPT][hapmap]
rs2607508	0.82[JPT][hapmap]
rs2637002	0.81[JPT][hapmap]
rs2637003	0.83[JPT][hapmap]
rs2637029	0.83[JPT][hapmap]
rs31308	0.82[JPT][hapmap]
rs365358	0.82[JPT][hapmap]
rs366313	0.82[JPT][hapmap]
rs368461	0.83[JPT][hapmap]
rs372215	0.81[JPT][hapmap]
rs377077	0.82[JPT][hapmap]
rs381575	0.82[JPT][hapmap]
rs392169	0.84[JPT][hapmap]
rs404838	0.89[JPT][hapmap]
rs4147732	0.83[JPT][hapmap]
rs4147734	0.83[JPT][hapmap]
rs417550	0.86[JPT][hapmap]
rs425880	0.82[JPT][hapmap]
rs432020	0.82[JPT][hapmap]
rs445347	0.83[JPT][hapmap]
rs451881	0.82[JPT][hapmap]
rs4865775	0.87[EUR][1000 genomes]
rs535277	0.82[JPT][hapmap]
rs6450142	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6450143	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6886118	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7701972	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7711180	0.82[JPT][hapmap]
rs7717681	0.82[JPT][hapmap]
rs786334	0.83[JPT][hapmap]
rs918625	0.82[JPT][hapmap]
rs923610	0.82[JPT][hapmap]
rs9790964	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv880868	chr5:52799618-53002783	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52809200-52833600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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