Variant report

Variant rs1844697
Chromosome Location chr5:52919693-52919694
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52889800-52920800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:52890200-52920000 Weak transcription HepG2 liver
3 chr5:52899400-52928400 Weak transcription Fetal Heart heart
4 chr5:52900800-52936600 Weak transcription NHEK skin
5 chr5:52901000-52932600 Weak transcription Aorta Aorta
6 chr5:52901400-52920600 Weak transcription Primary T helper naive cells fromperipheralblood blood
7 chr5:52901800-52927000 Weak transcription Pancreas Pancrea
8 chr5:52902600-52920800 Weak transcription Fetal Intestine Small intestine
9 chr5:52902600-52927000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr5:52902800-52920800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr5:52902800-52926400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr5:52903000-52927000 Weak transcription Left Ventricle heart
13 chr5:52903000-52943800 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr5:52903200-52919800 Weak transcription Fetal Muscle Leg muscle
15 chr5:52903200-52920800 Weak transcription Stomach Smooth Muscle stomach
16 chr5:52903200-52926800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr5:52903200-52939200 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr5:52903600-52926800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr5:52904200-52936800 Weak transcription NHDF-Ad bronchial
20 chr5:52904400-52920400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr5:52904400-52966600 Weak transcription Osteobl bone
22 chr5:52904600-52937000 Weak transcription Muscle Satellite Cultured Cells --
23 chr5:52905000-52920600 Weak transcription Primary T cells fromperipheralblood blood
24 chr5:52905000-52928800 Weak transcription HSMM muscle
25 chr5:52906400-52926800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr5:52909200-52920200 Weak transcription A549 lung
27 chr5:52909200-52920800 Weak transcription H9 Cell Line embryonic stem cell
28 chr5:52909200-52927000 Weak transcription Ovary ovary
29 chr5:52909600-52937600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr5:52910600-52920600 Weak transcription Brain Germinal Matrix brain
31 chr5:52910600-52941000 Weak transcription Rectal Smooth Muscle rectum
32 chr5:52917800-52921200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr5:52917800-52922000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr5:52918000-52920400 ZNF genes & repeats Primary hematopoietic stem cells blood
35 chr5:52918000-52921200 ZNF genes & repeats Primary T cells from cord blood blood
36 chr5:52918000-52921200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
37 chr5:52918200-52920000 Strong transcription Liver Liver
38 chr5:52918200-52920800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr5:52918200-52921200 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr5:52918400-52920000 Strong transcription Primary B cells from cord blood blood
41 chr5:52918400-52920200 Weak transcription Primary hematopoietic stem cells short term culture blood
42 chr5:52918600-52920800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr5:52919000-52920000 ZNF genes & repeats Psoas Muscle Psoas
44 chr5:52919000-52920600 Weak transcription Primary T helper cells PMA-I stimulated --
45 chr5:52919000-52921600 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
46 chr5:52919000-52922000 ZNF genes & repeats Fetal Lung lung
47 chr5:52919200-52920000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr5:52919200-52944000 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr5:52919600-52919800 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
50 chr5:52919600-52920200 Weak transcription Brain Anterior Caudate brain

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