The 2.0 version of rSNPBase

Variant report

Variant rs409313
Chromosome Location chr5:52899939-52899940
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52858000-52900400 Weak transcription Fetal Kidney kidney
2 chr5:52860000-52909000 Weak transcription Small Intestine intestine
3 chr5:52865000-52900400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
4 chr5:52873000-52900400 Weak transcription Gastric stomach
5 chr5:52875000-52900000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr5:52876800-52907400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
7 chr5:52877400-52900400 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr5:52878400-52901200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr5:52883000-52900200 Weak transcription Primary T cells fromperipheralblood blood
10 chr5:52884200-52900400 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr5:52885400-52900400 Weak transcription Primary T cells from cord blood blood
12 chr5:52885600-52902600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr5:52885800-52906000 Weak transcription Psoas Muscle Psoas
14 chr5:52887000-52900000 Weak transcription Brain Anterior Caudate brain
15 chr5:52888000-52905000 Weak transcription Right Ventricle heart
16 chr5:52888800-52900000 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr5:52888800-52900200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr5:52888800-52908200 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr5:52889000-52900200 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr5:52889000-52904200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
21 chr5:52889200-52900000 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr5:52889200-52900600 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr5:52889400-52902000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr5:52889800-52900200 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr5:52889800-52920800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr5:52890000-52900200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr5:52890000-52903000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
28 chr5:52890000-52912400 Weak transcription K562 blood
29 chr5:52890200-52900400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr5:52890200-52901400 Weak transcription Fetal Intestine Small intestine
31 chr5:52890200-52903000 Weak transcription HSMMtube muscle
32 chr5:52890200-52907200 Weak transcription iPS-18 Cell Line embryonic stem cell
33 chr5:52890200-52920000 Weak transcription HepG2 liver
34 chr5:52893400-52903400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr5:52894200-52905600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr5:52894600-52902200 Weak transcription H1 Cell Line embryonic stem cell
37 chr5:52895400-52900400 Weak transcription Primary B cells from cord blood blood
38 chr5:52895400-52902800 Weak transcription iPS-20b Cell Line embryonic stem cell
39 chr5:52895600-52900200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr5:52895600-52900400 Weak transcription Fetal Intestine Large intestine
41 chr5:52895600-52902000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr5:52896600-52902200 Weak transcription HUVEC blood vessel
43 chr5:52897000-52900000 Weak transcription GM12878-XiMat blood
44 chr5:52897200-52900200 Weak transcription Placenta Placenta
45 chr5:52897600-52900600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr5:52897800-52900600 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr5:52897800-52902600 Weak transcription Muscle Satellite Cultured Cells --
48 chr5:52897800-52904000 Weak transcription NH-A brain
49 chr5:52897800-52904200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr5:52897800-52906200 Weak transcription ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015