The 2.0 version of rSNPBase

Variant report

Variant rs42565
Chromosome Location chr5:52941541-52941542
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52903000-52943800 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr5:52904400-52966600 Weak transcription Osteobl bone
3 chr5:52919200-52944000 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr5:52920800-52978800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr5:52921000-52941800 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr5:52921600-52963400 Weak transcription A549 lung
7 chr5:52922000-52942000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr5:52925600-52961200 Weak transcription Esophagus oesophagus
9 chr5:52925800-52952000 Weak transcription Colonic Mucosa Colon
10 chr5:52926000-52941800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr5:52926000-52943800 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr5:52926600-52948800 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr5:52926800-52963600 Weak transcription Brain Inferior Temporal Lobe brain
14 chr5:52927400-52945000 Weak transcription Fetal Brain Female brain
15 chr5:52927400-52961000 Weak transcription Placenta Placenta
16 chr5:52927600-52942400 Weak transcription Fetal Thymus thymus
17 chr5:52927800-52948600 Weak transcription Pancreas Pancrea
18 chr5:52927800-52961200 Weak transcription H1 Cell Line embryonic stem cell
19 chr5:52927800-52961200 Weak transcription Stomach Smooth Muscle stomach
20 chr5:52927800-52961200 Weak transcription Thymus Thymus
21 chr5:52928000-52945000 Weak transcription Fetal Intestine Small intestine
22 chr5:52928000-52946000 Weak transcription Gastric stomach
23 chr5:52928000-52962200 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr5:52928200-52944000 Weak transcription GM12878-XiMat blood
25 chr5:52928400-52942000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr5:52928600-52944400 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr5:52929000-52981800 Weak transcription Primary T helper naive cells from peripheral blood blood
28 chr5:52929200-52941800 Weak transcription Primary T helper cells PMA-I stimulated --
29 chr5:52929200-52942000 Weak transcription Dnd41 blood
30 chr5:52929200-52943200 Weak transcription Duodenum Mucosa Duodenum
31 chr5:52929200-52947600 Weak transcription Right Ventricle heart
32 chr5:52929400-52944400 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr5:52929400-52964600 Weak transcription Brain Cingulate Gyrus brain
34 chr5:52929600-52941600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr5:52931000-52944600 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr5:52933200-52943000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr5:52933200-52951600 Weak transcription Aorta Aorta
38 chr5:52933400-52941600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
39 chr5:52935200-52978000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr5:52936600-52942000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr5:52936600-52943200 Weak transcription Fetal Intestine Large intestine
42 chr5:52936600-52944000 Weak transcription Fetal Muscle Leg muscle
43 chr5:52936600-52948400 Weak transcription Lung lung
44 chr5:52936800-52941600 Weak transcription Primary T cells fromperipheralblood blood
45 chr5:52936800-52941800 Weak transcription Primary B cells from cord blood blood
46 chr5:52936800-52942000 Enhancers HUES64 Cell Line embryonic stem cell
47 chr5:52936800-52942000 Weak transcription Liver Liver
48 chr5:52936800-52943000 Weak transcription Fetal Muscle Trunk muscle
49 chr5:52936800-52943000 Weak transcription Left Ventricle heart
50 chr5:52936800-52943200 Weak transcription Primary T helper 17 cells PMA-I stimulated --

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015