Variant report

Variant	rs7705786
Chromosome Location	chr5:98129916-98129917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98129808..98132282-chr5:98134081..98135788,2	K562	blood:
2	chr5:98111277..98112925-chr5:98127736..98129977,2	MCF-7	breast:
3	chr5:98105450..98112138-chr5:98128603..98138411,14	MCF-7	breast:
4	chr5:98124225..98126572-chr5:98127471..98130049,2	K562	blood:
5	chr5:98124398..98126468-chr5:98128299..98131960,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174136	Chromatin interaction
ENSG00000246763	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10515284	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11956636	0.85[EUR][1000 genomes]
rs17166414	0.82[EUR][1000 genomes]
rs17166423	0.82[EUR][1000 genomes]
rs17166439	0.82[EUR][1000 genomes]
rs17166455	0.80[EUR][1000 genomes]
rs17663317	0.89[EUR][1000 genomes]
rs2164986	0.82[EUR][1000 genomes]
rs3179904	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36011435	0.82[EUR][1000 genomes]
rs56232429	0.91[EUR][1000 genomes]
rs56331326	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56400831	0.82[EUR][1000 genomes]
rs59181854	0.83[EUR][1000 genomes]
rs6866527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6893282	0.85[EUR][1000 genomes]
rs73776004	0.85[EUR][1000 genomes]
rs73776005	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98111000-98131800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:98111600-98131800	Weak transcription	Placenta	Placenta
3	chr5:98112000-98135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:98114800-98131400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:98117600-98132200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:98118400-98131800	Weak transcription	A549	lung
7	chr5:98122200-98132000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:98123000-98132400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:98123800-98130600	Weak transcription	Colonic Mucosa	Colon
10	chr5:98123800-98131000	Weak transcription	Right Atrium	heart
11	chr5:98123800-98132000	Weak transcription	Primary T cells from cord blood	blood
12	chr5:98123800-98136800	Weak transcription	Fetal Brain Male	brain
13	chr5:98123800-98140600	Weak transcription	Brain Substantia Nigra	brain
14	chr5:98124000-98132000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr5:98124000-98132000	Weak transcription	Fetal Lung	lung
16	chr5:98124600-98130600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:98125200-98132000	Genic enhancers	NHDF-Ad	bronchial
18	chr5:98125600-98132000	Weak transcription	Stomach Mucosa	stomach
19	chr5:98126200-98131200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:98127400-98131200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:98127400-98131600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:98127600-98130000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:98127600-98131600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:98127600-98131800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:98127600-98131800	Weak transcription	Fetal Kidney	kidney
26	chr5:98127800-98130800	Genic enhancers	Stomach Smooth Muscle	stomach
27	chr5:98127800-98131200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:98127800-98131800	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:98128000-98130800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:98128000-98131000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:98128200-98130200	Strong transcription	NHEK	skin
32	chr5:98128200-98130800	Strong transcription	Fetal Stomach	stomach
33	chr5:98128400-98130000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr5:98128600-98130000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:98128600-98130000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:98128600-98130000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr5:98128600-98130000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:98128600-98130000	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:98128600-98130000	Strong transcription	Adipose Nuclei	Adipose
40	chr5:98128600-98130000	Strong transcription	HUVEC	blood vessel
41	chr5:98128600-98130400	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr5:98128600-98130600	Strong transcription	HSMMtube	muscle
43	chr5:98128600-98131200	Strong transcription	Fetal Intestine Small	intestine
44	chr5:98128600-98131400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr5:98128800-98130000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr5:98128800-98130000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr5:98128800-98130000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr5:98128800-98130000	Strong transcription	Aorta	Aorta
49	chr5:98128800-98130000	Strong transcription	Liver	Liver
50	chr5:98128800-98130000	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links