Variant report

Variant	rs7707127
Chromosome Location	chr5:112582712-112582713
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10519343	0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10519345	0.97[ASN][1000 genomes]
rs10519346	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1116547	0.84[EUR][1000 genomes]
rs11241197	0.89[ASN][1000 genomes]
rs11740045	0.89[ASN][1000 genomes]
rs11740190	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11740233	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11740318	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11740353	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11740443	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11741794	0.89[ASN][1000 genomes]
rs11741937	0.89[ASN][1000 genomes]
rs11743052	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11744606	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11746532	0.89[ASN][1000 genomes]
rs11746791	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11746821	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11748058	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11748465	0.89[ASN][1000 genomes]
rs11748524	0.89[ASN][1000 genomes]
rs11749864	0.89[ASN][1000 genomes]
rs12186466	0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12188069	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12188070	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12188230	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12518849	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12519753	0.81[EUR][1000 genomes]
rs12523027	0.89[ASN][1000 genomes]
rs12523284	0.89[ASN][1000 genomes]
rs17135454	0.83[YRI][hapmap]
rs17135463	0.83[YRI][hapmap]
rs17135488	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17135506	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17135507	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17135514	0.89[YRI][hapmap];0.93[AFR][1000 genomes]
rs17135515	0.83[YRI][hapmap];0.92[ASN][1000 genomes]
rs17135517	0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17135519	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs17135520	0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17135526	0.92[ASN][1000 genomes]
rs17135531	0.92[ASN][1000 genomes]
rs17135535	0.89[ASN][1000 genomes]
rs17135543	0.87[ASN][1000 genomes]
rs17135546	0.87[ASN][1000 genomes]
rs1845289	0.89[ASN][1000 genomes]
rs1997521	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2091803	0.90[ASN][1000 genomes]
rs2091804	0.90[ASN][1000 genomes]
rs34271294	0.82[ASN][1000 genomes]
rs4632792	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4705806	0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4705807	0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705808	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705809	0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705810	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56294433	0.82[ASN][1000 genomes]
rs56362568	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59107004	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59222257	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60087454	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60437559	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6594695	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6594696	0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6594697	0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs66893265	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67063423	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67373655	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67550282	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68069850	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6879761	0.95[ASN][1000 genomes]
rs6887565	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6888602	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73244768	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73244769	0.93[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73244770	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73244772	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73244779	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73246604	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73246629	0.89[ASN][1000 genomes]
rs73246648	0.87[ASN][1000 genomes]
rs73246657	0.82[ASN][1000 genomes]
rs73246677	0.89[ASN][1000 genomes]
rs73246681	0.89[ASN][1000 genomes]
rs7724707	0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724717	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724936	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs971370	0.89[ASN][1000 genomes]
rs971371	0.89[ASN][1000 genomes]
rs971373	0.89[ASN][1000 genomes]
rs977997	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112557200-112585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:112572400-112590400	Weak transcription	Liver	Liver
3	chr5:112572600-112585800	Weak transcription	Pancreas	Pancrea
4	chr5:112575400-112585400	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:112578600-112584200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:112578800-112584800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:112579600-112585400	Weak transcription	Esophagus	oesophagus
8	chr5:112579600-112587000	Weak transcription	Aorta	Aorta
9	chr5:112580200-112583000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:112580400-112583400	Enhancers	Fetal Heart	heart
11	chr5:112580400-112583800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:112580600-112583200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:112580600-112597400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:112580800-112583600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr5:112580800-112583600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:112580800-112583800	Enhancers	Psoas Muscle	Psoas
17	chr5:112581000-112582800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:112581000-112583000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:112581000-112583200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:112581200-112582800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr5:112581200-112582800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:112581200-112582800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:112581200-112583000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:112581200-112583600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr5:112581400-112582800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr5:112581400-112582800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr5:112581400-112582800	Enhancers	Stomach Mucosa	stomach
28	chr5:112581400-112583000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr5:112581400-112584400	Enhancers	Left Ventricle	heart
30	chr5:112581400-112590800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:112581600-112583000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:112581600-112585000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr5:112581800-112582800	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr5:112581800-112582800	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr5:112581800-112583000	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr5:112582000-112582800	Flanking Active TSS	HSMMtube	muscle
37	chr5:112582000-112583000	Enhancers	Fetal Stomach	stomach
38	chr5:112582000-112583000	Enhancers	Placenta Amnion	Placenta Amnion
39	chr5:112582200-112582800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr5:112582200-112582800	Enhancers	Fetal Muscle Trunk	muscle
41	chr5:112582200-112582800	Enhancers	Placenta	Placenta
42	chr5:112582200-112583000	Enhancers	H1 Cell Line	embryonic stem cell
43	chr5:112582200-112583600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:112582200-112585200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr5:112582200-112585400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr5:112582200-112586400	Weak transcription	HMEC	breast
47	chr5:112582400-112582800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr5:112582400-112582800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:112582400-112582800	Enhancers	NHEK	skin
50	chr5:112582400-112583000	Enhancers	NHDF-Ad	bronchial

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