Variant report
| Variant | rs770935 |
|---|---|
| Chromosome Location | chr6:16868111-16868112 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:16866282..16868512-chr6:16869553..16872906,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10949386 | 0.83[ASN][1000 genomes] |
| rs12196917 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12202769 | 0.82[EUR][1000 genomes] |
| rs12204538 | 0.83[ASN][1000 genomes] |
| rs1240835 | 0.83[ASN][1000 genomes] |
| rs1240839 | 0.83[ASN][1000 genomes] |
| rs12526123 | 0.80[ASN][1000 genomes] |
| rs2797805 | 0.83[ASN][1000 genomes] |
| rs4311514 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs55678019 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs57192327 | 0.80[ASN][1000 genomes] |
| rs6459487 | 0.82[ASN][1000 genomes] |
| rs770931 | 0.93[ASN][1000 genomes] |
| rs770937 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs770938 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9464950 | 0.83[ASN][1000 genomes] |
| rs9464951 | 0.83[ASN][1000 genomes] |
| rs9464952 | 0.82[ASN][1000 genomes] |
| rs9477235 | 0.83[ASN][1000 genomes] |
| rs9477241 | 0.84[ASN][1000 genomes] |
| rs9477245 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9477248 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1838885 | chr6:16866948-16885765 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv1837694 | chr6:16866948-16885869 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1842967 | chr6:16866948-16885869 | Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:16868000-16869600 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
