Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16868650..16871366-chr6:16871542..16874154,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10949386	0.81[ASN][1000 genomes]
rs12196917	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12202769	0.82[EUR][1000 genomes]
rs12204538	0.81[ASN][1000 genomes]
rs1240835	0.81[ASN][1000 genomes]
rs1240839	0.81[ASN][1000 genomes]
rs2797805	0.81[ASN][1000 genomes]
rs4305728	0.81[ASN][1000 genomes]
rs4311514	0.83[ASN][1000 genomes]
rs55678019	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6459487	0.80[ASN][1000 genomes]
rs770931	0.91[ASN][1000 genomes]
rs770935	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs770937	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9464950	0.81[ASN][1000 genomes]
rs9464951	0.81[ASN][1000 genomes]
rs9464952	0.80[ASN][1000 genomes]
rs9477235	0.81[ASN][1000 genomes]
rs9477241	0.86[ASN][1000 genomes]
rs9477245	0.83[EUR][1000 genomes]
rs9477248	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1838885	chr6:16866948-16885765	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1837694	chr6:16866948-16885869	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1842967	chr6:16866948-16885869	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16868000-16869600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:16868600-16869800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:16868800-16869600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:16868800-16869800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:16868800-16869800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:16869200-16869600	Enhancers	NHEK	skin
7	chr6:16869200-16870000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:16869400-16869800	Enhancers	Hela-S3	cervix

Quick Search: