Variant report

Variant	rs7723655
Chromosome Location	chr5:90477010-90477011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90470652..90472646-chr5:90476346..90478520,2	MCF-7	breast:
2	chr5:90474806..90477706-chr5:90478635..90481479,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10065773	1.00[EUR][1000 genomes]
rs16869400	1.00[EUR][1000 genomes]
rs16869402	1.00[EUR][1000 genomes]
rs16869424	1.00[EUR][1000 genomes]
rs16869431	1.00[EUR][1000 genomes]
rs16869437	1.00[EUR][1000 genomes]
rs16869489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59753442	1.00[EUR][1000 genomes]
rs6452943	1.00[EUR][1000 genomes]
rs6879069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897191	1.00[EUR][1000 genomes]
rs7702079	1.00[EUR][1000 genomes]
rs7702715	1.00[EUR][1000 genomes]
rs7712139	1.00[EUR][1000 genomes]
rs7712353	1.00[EUR][1000 genomes]
rs7722301	1.00[EUR][1000 genomes]
rs7726939	1.00[EUR][1000 genomes]
rs7731268	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90467600-90485600	Weak transcription	Fetal Intestine Small	intestine
2	chr5:90468000-90478400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:90472400-90478600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:90472800-90478200	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:90472800-90478400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:90473000-90478000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:90473200-90478000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:90473200-90478200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:90473200-90478200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:90473200-90478400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:90473200-90479400	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:90473400-90478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:90473400-90485600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:90473800-90479400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr5:90474000-90478600	Weak transcription	Osteobl	bone
16	chr5:90474400-90478400	Weak transcription	Adipose Nuclei	Adipose
17	chr5:90474600-90477600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:90474800-90477200	Weak transcription	Primary B cells from cord blood	blood
19	chr5:90475200-90477200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:90475200-90478400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:90475400-90478200	Weak transcription	NHDF-Ad	bronchial
22	chr5:90475400-90478400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:90475600-90477400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:90475600-90478200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:90475600-90478200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr5:90475600-90478400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:90475600-90478400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:90475600-90478400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:90475600-90479000	Weak transcription	NHLF	lung
30	chr5:90477000-90477200	Enhancers	Rectal Mucosa Donor 29	rectum

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