Variant report

Variant	rs7726939
Chromosome Location	chr5:90435732-90435733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90434341..90435895-chr5:90675855..90677767,2	K562	blood:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10065773	1.00[EUR][1000 genomes]
rs16869400	1.00[EUR][1000 genomes]
rs16869402	1.00[EUR][1000 genomes]
rs16869424	1.00[EUR][1000 genomes]
rs16869431	1.00[EUR][1000 genomes]
rs16869437	1.00[EUR][1000 genomes]
rs16869489	1.00[EUR][1000 genomes]
rs59753442	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6452943	1.00[EUR][1000 genomes]
rs6879069	1.00[EUR][1000 genomes]
rs6897191	1.00[EUR][1000 genomes]
rs7702079	1.00[EUR][1000 genomes]
rs7702715	1.00[EUR][1000 genomes]
rs7712139	1.00[EUR][1000 genomes]
rs7712353	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7722301	1.00[EUR][1000 genomes]
rs7723655	1.00[EUR][1000 genomes]
rs7731268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90422800-90440600	Weak transcription	Fetal Kidney	kidney
2	chr5:90423600-90440400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:90424600-90440200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:90425400-90437000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:90425400-90440200	Weak transcription	Brain Germinal Matrix	brain
6	chr5:90428000-90439200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:90428600-90438200	Weak transcription	HUVEC	blood vessel
8	chr5:90430200-90440000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:90430400-90437600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:90431800-90437600	Weak transcription	Right Atrium	heart
11	chr5:90432000-90437600	Weak transcription	Pancreas	Pancrea
12	chr5:90432000-90438800	Weak transcription	Esophagus	oesophagus
13	chr5:90432000-90444000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:90432200-90437200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:90432400-90437400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:90432400-90437400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:90432400-90437400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:90432400-90444200	Weak transcription	A549	lung
19	chr5:90433600-90440000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:90434000-90438400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:90435200-90435800	Enhancers	GM12878-XiMat	blood
22	chr5:90435200-90436200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:90435200-90436200	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr5:90435400-90435800	Enhancers	Fetal Lung	lung
25	chr5:90435400-90436200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:90435400-90437600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr5:90435400-90439600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:90435600-90435800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:90435600-90435800	Enhancers	Colon Smooth Muscle	Colon
30	chr5:90435600-90436000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:90435600-90436000	Enhancers	Brain Anterior Caudate	brain
32	chr5:90435600-90436200	Enhancers	NHLF	lung
33	chr5:90435600-90436600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:90435600-90438800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr5:90435600-90440000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr5:90435600-90443800	Enhancers	Primary monocytes fromperipheralblood	blood

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