Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10079289	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11134469	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs12187148	0.81[EUR][1000 genomes]
rs12188727	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs13354537	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13436078	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13436903	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1421991	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17069217	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs17432815	0.82[CEU][hapmap]
rs17511302	0.82[CEU][hapmap]
rs17512123	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2878866	0.82[CEU][hapmap]
rs57873364	0.87[EUR][1000 genomes]
rs58847998	0.90[EUR][1000 genomes]
rs59682785	0.92[EUR][1000 genomes]
rs6869161	0.90[EUR][1000 genomes]
rs6874034	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs6880473	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs73801394	0.85[EUR][1000 genomes]
rs73801401	0.89[EUR][1000 genomes]
rs73803207	0.87[EUR][1000 genomes]
rs73803208	0.89[EUR][1000 genomes]
rs73803212	0.89[EUR][1000 genomes]
rs73803215	0.92[EUR][1000 genomes]
rs7715344	0.82[CEU][hapmap]
rs7719191	0.82[CEU][hapmap]
rs7725488	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7737377	0.82[CEU][hapmap]
rs918794	0.87[EUR][1000 genomes]
rs918795	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs9313389	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167248000-167258400	Weak transcription	Aorta	Aorta
2	chr5:167248400-167255200	Weak transcription	Esophagus	oesophagus
3	chr5:167248600-167270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167250600-167255200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167250600-167255800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167250800-167255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167251000-167256600	Genic enhancers	NHEK	skin
8	chr5:167251400-167262200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:167251800-167257000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:167252600-167276000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:167253400-167255400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:167253800-167255600	Enhancers	HMEC	breast
14	chr5:167254800-167255200	Enhancers	HSMM	muscle
15	chr5:167255000-167255400	Enhancers	Lung	lung

Quick Search: