Variant report

Variant	rs17069217
Chromosome Location	chr5:167211436-167211437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10079289	0.85[EUR][1000 genomes]
rs11134469	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12187148	0.85[EUR][1000 genomes]
rs12188727	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13354537	0.84[EUR][1000 genomes]
rs13436078	0.85[EUR][1000 genomes]
rs13436903	0.85[EUR][1000 genomes]
rs1421991	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17432815	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17511302	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17512123	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2878866	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs55824929	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56000978	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57873364	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58440562	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58847998	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59682785	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6869161	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6880473	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73801365	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73801390	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73801394	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73801395	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73801401	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803207	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73803208	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803212	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73803215	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7711527	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7715344	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7719191	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7721878	0.80[EUR][1000 genomes]
rs7725172	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs7725488	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs7736577	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7737377	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs918794	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs918795	1.00[CEU][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9313389	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167205400-167212200	Weak transcription	HSMM	muscle
3	chr5:167209400-167214600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:167209800-167211600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:167210400-167211600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:167210400-167212800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:167210800-167217200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:167210800-167225000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:167211000-167214600	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:167211200-167219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:167211400-167212600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:167211400-167212600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:167211400-167212600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:167211400-167213800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links