Variant report

Variant	rs73801390
Chromosome Location	chr5:167194180-167194181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1023629	0.86[EUR][1000 genomes]
rs11134469	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12188727	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1421991	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17069217	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17432815	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17511302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17512123	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2878866	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55824929	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56000978	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57873364	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58440562	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58847998	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59682785	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6869161	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6874034	0.96[EUR][1000 genomes]
rs6880473	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73801365	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73801394	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73801395	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73801401	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73803207	0.82[AMR][1000 genomes]
rs73803208	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73803212	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73803215	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7711527	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7715344	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7719191	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7721878	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736577	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7737377	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs918794	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs918795	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9313389	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167183400-167197200	Weak transcription	HSMMtube	muscle
2	chr5:167186800-167197200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:167190600-167195600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167191600-167197400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:167192000-167195000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167192000-167195400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:167192200-167194800	Weak transcription	Osteobl	bone
8	chr5:167192400-167194600	Weak transcription	NHDF-Ad	bronchial
9	chr5:167192600-167194800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:167192800-167194800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:167192800-167194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:167192800-167197000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167192800-167199400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:167193000-167196800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:167193000-167204400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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