Variant report

Variant	rs6874034
Chromosome Location	chr5:167252756-167252757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1023629	0.83[EUR][1000 genomes]
rs12188727	0.82[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes]
rs1421991	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17432815	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs17511302	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs17512123	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2878866	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs55824929	0.94[EUR][1000 genomes]
rs56000978	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57873364	0.85[AMR][1000 genomes]
rs58440562	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58847998	0.82[EUR][1000 genomes]
rs59682785	0.80[EUR][1000 genomes]
rs6869161	0.82[EUR][1000 genomes]
rs6880473	0.82[AMR][1000 genomes]
rs73801365	0.94[EUR][1000 genomes]
rs73801390	0.96[EUR][1000 genomes]
rs73801394	0.86[EUR][1000 genomes]
rs73801395	0.92[EUR][1000 genomes]
rs73801401	0.85[AMR][1000 genomes]
rs73803207	0.82[AMR][1000 genomes]
rs73803208	0.85[AMR][1000 genomes]
rs73803212	0.85[AMR][1000 genomes]
rs73803215	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7711527	0.96[EUR][1000 genomes]
rs7715344	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7719191	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7721878	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7725172	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs7725488	0.82[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7736577	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs7737377	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs918794	0.85[AMR][1000 genomes]
rs918795	0.85[AMR][1000 genomes]
rs9313389	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167248000-167258400	Weak transcription	Aorta	Aorta
2	chr5:167248400-167255200	Weak transcription	Esophagus	oesophagus
3	chr5:167248600-167270000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:167250000-167253400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167250200-167253800	Weak transcription	HMEC	breast
6	chr5:167250600-167255200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167250600-167255800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167250800-167255200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:167251000-167256600	Genic enhancers	NHEK	skin
10	chr5:167251400-167253800	Weak transcription	Brain Germinal Matrix	brain
11	chr5:167251400-167262200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:167251800-167257000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:167252600-167276000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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