Variant report

Variant	rs73801395
Chromosome Location	chr5:167204948-167204949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1023629	0.83[EUR][1000 genomes]
rs11134469	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12188727	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1421991	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17069217	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17432815	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17511302	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17512123	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2878866	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55824929	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56000978	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57873364	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58440562	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58847998	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59682785	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6869161	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6874034	0.92[EUR][1000 genomes]
rs6880473	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73801365	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73801390	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73801394	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73801401	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73803207	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73803208	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73803212	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73803215	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7711527	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7715344	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7719191	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7721878	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7736577	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7737377	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs918794	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs918795	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9313389	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167199000-167206000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:167203600-167218800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167204000-167205800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:167204200-167205600	Enhancers	HMEC	breast
5	chr5:167204200-167206600	Weak transcription	Fetal Lung	lung
6	chr5:167204400-167205000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167204400-167205200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167204400-167205200	Enhancers	Osteobl	bone
9	chr5:167204400-167205400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:167204400-167205400	Enhancers	HSMM	muscle
11	chr5:167204600-167205000	Enhancers	Adipose Nuclei	Adipose
12	chr5:167204600-167205400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr5:167204600-167206000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:167204800-167205000	Active TSS	NHDF-Ad	bronchial
15	chr5:167204800-167205200	Enhancers	NHEK	skin

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