Variant report

Variant	rs7730743
Chromosome Location	chr5:68132620-68132621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34044149	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34264944	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34845252	0.82[AMR][1000 genomes]
rs35092707	0.87[AMR][1000 genomes]
rs35260480	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35428898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35666670	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs71622264	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68131200-68134800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:68131200-68135200	Weak transcription	Adipose Nuclei	Adipose
3	chr5:68131400-68134200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:68131400-68134200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:68131800-68134000	Weak transcription	Placenta	Placenta
6	chr5:68132200-68133000	ZNF genes & repeats	Aorta	Aorta
7	chr5:68132600-68133600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:68132600-68134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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