Variant report

Variant	rs7743997
Chromosome Location	chr6:25266684-25266685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25266023..25266919-chr6:25278956..25279656,2	MCF-7	breast:
2	chr6:25266060..25267780-chr6:26028723..26030730,2	K562	blood:
3	chr6:25266298..25266998-chr6:25489707..25490300,2	MCF-7	breast:
4	chr6:25265692..25268532-chr6:25269921..25272055,2	MCF-7	breast:
5	chr6:25265953..25268779-chr6:25278296..25280757,3	MCF-7	breast:
6	chr6:25265686..25266899-chr6:25490019..25490918,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079691	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10456320	1.00[YRI][hapmap]
rs12203442	1.00[CHB][hapmap]
rs16890271	1.00[ASN][1000 genomes]
rs1810471	1.00[CHB][hapmap]
rs1815097	1.00[ASN][1000 genomes]
rs2690043	1.00[ASN][1000 genomes]
rs2690044	1.00[ASN][1000 genomes]
rs2690045	1.00[ASN][1000 genomes]
rs2690046	1.00[ASN][1000 genomes]
rs2690048	1.00[ASN][1000 genomes]
rs2690049	1.00[ASN][1000 genomes]
rs2690050	1.00[ASN][1000 genomes]
rs2690051	1.00[ASN][1000 genomes]
rs2690052	1.00[ASN][1000 genomes]
rs2690055	1.00[ASN][1000 genomes]
rs2690056	1.00[CHB][hapmap]
rs2690057	1.00[ASN][1000 genomes]
rs2690058	1.00[ASN][1000 genomes]
rs2690062	1.00[CHB][hapmap]
rs2690063	1.00[ASN][1000 genomes]
rs2690066	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2690069	1.00[ASN][1000 genomes]
rs2690102	1.00[ASN][1000 genomes]
rs2690104	1.00[ASN][1000 genomes]
rs2744255	1.00[ASN][1000 genomes]
rs2744259	1.00[ASN][1000 genomes]
rs2744260	1.00[ASN][1000 genomes]
rs2744263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2744265	1.00[ASN][1000 genomes]
rs2744266	1.00[ASN][1000 genomes]
rs2744273	1.00[CHB][hapmap]
rs2744274	1.00[CHB][hapmap]
rs2744275	1.00[ASN][1000 genomes]
rs2744276	1.00[ASN][1000 genomes]
rs2744277	1.00[ASN][1000 genomes]
rs2744278	1.00[ASN][1000 genomes]
rs2744279	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2744280	1.00[ASN][1000 genomes]
rs2744281	1.00[CHB][hapmap]
rs2744282	1.00[ASN][1000 genomes]
rs2744284	1.00[ASN][1000 genomes]
rs2744285	1.00[ASN][1000 genomes]
rs2744286	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs303005	1.00[CHB][hapmap]
rs4594940	1.00[CHB][hapmap]
rs4712910	0.85[YRI][hapmap]
rs6456661	1.00[CHB][hapmap]
rs6902634	0.83[YRI][hapmap]
rs7743508	1.00[CHB][hapmap]
rs7752524	1.00[YRI][hapmap]
rs7764258	1.00[YRI][hapmap]
rs7767189	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs940405	1.00[ASN][1000 genomes]
rs9688905	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883483	chr6:25200842-25272435	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883484	chr6:25237288-25303100	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25265800-25267200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:25265800-25267400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:25265800-25267400	Enhancers	NHDF-Ad	bronchial
4	chr6:25266000-25266800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:25266200-25266800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:25266200-25267000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:25266200-25267200	Enhancers	Osteobl	bone
8	chr6:25266400-25267000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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