Variant report

Variant	rs7767189
Chromosome Location	chr6:25258190-25258191
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr6:25258089-25258403	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000216718	TF binding region

Extended variants
information (count: 49 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10456320	1.00[YRI][hapmap]
rs16890271	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs1815097	1.00[ASN][1000 genomes]
rs2690043	1.00[ASN][1000 genomes]
rs2690044	1.00[ASN][1000 genomes]
rs2690045	1.00[ASN][1000 genomes]
rs2690046	1.00[ASN][1000 genomes]
rs2690048	1.00[ASN][1000 genomes]
rs2690049	1.00[ASN][1000 genomes]
rs2690050	1.00[ASN][1000 genomes]
rs2690051	1.00[ASN][1000 genomes]
rs2690052	1.00[ASN][1000 genomes]
rs2690055	1.00[ASN][1000 genomes]
rs2690057	1.00[ASN][1000 genomes]
rs2690058	1.00[ASN][1000 genomes]
rs2690063	1.00[ASN][1000 genomes]
rs2690066	1.00[ASN][1000 genomes]
rs2690069	1.00[ASN][1000 genomes]
rs2690102	1.00[ASN][1000 genomes]
rs2690104	1.00[ASN][1000 genomes]
rs2744255	1.00[ASN][1000 genomes]
rs2744259	1.00[ASN][1000 genomes]
rs2744260	1.00[ASN][1000 genomes]
rs2744263	1.00[ASN][1000 genomes]
rs2744265	1.00[ASN][1000 genomes]
rs2744266	1.00[ASN][1000 genomes]
rs2744275	1.00[ASN][1000 genomes]
rs2744276	1.00[ASN][1000 genomes]
rs2744277	1.00[ASN][1000 genomes]
rs2744278	1.00[ASN][1000 genomes]
rs2744279	1.00[ASN][1000 genomes]
rs2744280	1.00[ASN][1000 genomes]
rs2744282	1.00[ASN][1000 genomes]
rs2744284	1.00[ASN][1000 genomes]
rs2744285	1.00[ASN][1000 genomes]
rs2744286	1.00[ASN][1000 genomes]
rs4712910	0.85[YRI][hapmap]
rs6902634	1.00[YRI][hapmap]
rs7743997	1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7752524	1.00[YRI][hapmap]
rs7764258	1.00[YRI][hapmap]
rs940405	1.00[ASN][1000 genomes]
rs9688905	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1025694	chr6:25136860-25309450	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1020774	chr6:25154152-25285679	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv538161	chr6:25154152-25285679	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv883483	chr6:25200842-25272435	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883484	chr6:25237288-25303100	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7767189	HBD	trans	lymphoblastoid	seeQTL
rs7767189	CD3D	trans	lymphoblastoid	seeQTL
rs7767189	ARHGAP32	trans	lymphoblastoid	seeQTL
rs7767189	DSC3	trans	lymphoblastoid	seeQTL
rs7767189	PRRX1	trans	lymphoblastoid	seeQTL
rs7767189	SYPL2	trans	lymphoblastoid	seeQTL
rs7767189	PDE9A	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25254600-25263800	Weak transcription	NHEK	skin
2	chr6:25258000-25258600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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