Variant report

Variant	rs7744107
Chromosome Location	chr6:71905687-71905688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10945292	1.00[EUR][1000 genomes]
rs57813102	1.00[EUR][1000 genomes]
rs59693971	1.00[EUR][1000 genomes]
rs9455367	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71891800-71907200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:71898000-71907400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:71901400-71906600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:71903200-71906800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:71903200-71907000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:71904200-71906800	Enhancers	HSMMtube	muscle
7	chr6:71904200-71907000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:71904200-71907200	Enhancers	Osteobl	bone
9	chr6:71904200-71907400	Enhancers	HSMM	muscle
10	chr6:71904400-71907400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:71904600-71906800	Weak transcription	NH-A	brain
12	chr6:71905000-71906000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:71905000-71906600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:71905200-71906000	Weak transcription	Adipose Nuclei	Adipose
15	chr6:71905200-71907000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:71905200-71907000	Weak transcription	Hela-S3	cervix
17	chr6:71905200-71907400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:71905400-71907400	Weak transcription	A549	lung
19	chr6:71905400-71908000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:71905600-71906800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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