Variant report

Variant	rs10945292
Chromosome Location	chr6:71869340-71869341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11965581	1.00[AMR][1000 genomes]
rs16881007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4340962	1.00[CEU][hapmap]
rs55666367	1.00[AMR][1000 genomes]
rs56131215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56192260	1.00[AMR][1000 genomes]
rs56365444	1.00[AMR][1000 genomes]
rs57813102	1.00[EUR][1000 genomes]
rs59282007	1.00[AMR][1000 genomes]
rs59358439	1.00[AMR][1000 genomes]
rs59600420	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59693971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60100541	1.00[AMR][1000 genomes]
rs60222660	1.00[AMR][1000 genomes]
rs6930158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497926	1.00[AMR][1000 genomes]
rs73497994	1.00[AMR][1000 genomes]
rs73498904	1.00[AMR][1000 genomes]
rs73746981	1.00[AMR][1000 genomes]
rs73746987	1.00[AMR][1000 genomes]
rs73746995	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73746997	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73746998	0.88[AFR][1000 genomes]
rs73749806	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744107	1.00[EUR][1000 genomes]
rs7756861	1.00[AMR][1000 genomes]
rs7762477	1.00[AMR][1000 genomes]
rs7771883	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9455367	1.00[EUR][1000 genomes]
rs9969061	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71866400-71869800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:71866600-71869800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:71866800-71870000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:71867200-71869800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:71868000-71869400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:71868400-71869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:71868400-71869400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:71868600-71869400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:71868800-71869600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:71869200-71869600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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