Variant report
| Variant | rs59693971 |
|---|---|
| Chromosome Location | chr6:71893505-71893506 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:71892402..71894327-chr6:71895925..71898197,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10945292 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11965581 | 1.00[AMR][1000 genomes] |
| rs16881007 | 1.00[AMR][1000 genomes] |
| rs55666367 | 1.00[AMR][1000 genomes] |
| rs56131215 | 1.00[AMR][1000 genomes] |
| rs56192260 | 1.00[AMR][1000 genomes] |
| rs56365444 | 1.00[AMR][1000 genomes] |
| rs57813102 | 1.00[EUR][1000 genomes] |
| rs59282007 | 1.00[AMR][1000 genomes] |
| rs59358439 | 1.00[AMR][1000 genomes] |
| rs59600420 | 1.00[AMR][1000 genomes] |
| rs60100541 | 1.00[AMR][1000 genomes] |
| rs60222660 | 1.00[AMR][1000 genomes] |
| rs6930158 | 1.00[AMR][1000 genomes] |
| rs73497926 | 1.00[AMR][1000 genomes] |
| rs73497994 | 1.00[AMR][1000 genomes] |
| rs73498904 | 1.00[AMR][1000 genomes] |
| rs73746981 | 1.00[AMR][1000 genomes] |
| rs73746987 | 1.00[AMR][1000 genomes] |
| rs73746995 | 1.00[AMR][1000 genomes] |
| rs73746997 | 1.00[AMR][1000 genomes] |
| rs73749806 | 1.00[AMR][1000 genomes] |
| rs73749809 | 1.00[AMR][1000 genomes] |
| rs7744107 | 1.00[EUR][1000 genomes] |
| rs7762477 | 1.00[AMR][1000 genomes] |
| rs7771883 | 1.00[AMR][1000 genomes] |
| rs9455367 | 1.00[EUR][1000 genomes] |
| rs9969061 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv527265 | chr6:71867477-71902656 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv886149 | chr6:71875777-71936292 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv886150 | chr6:71888871-71936292 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1016393 | chr6:71890237-71941786 | Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv526921 | chr6:71890237-71950242 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:71891800-71897600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:71891800-71907200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 3 | chr6:71892400-71897600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
