Variant report

Variant	rs7744993
Chromosome Location	chr6:28334923-28334924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28333760..28336072-chr6:28337561..28339337,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs213229	1.00[AFR][1000 genomes]
rs213242	1.00[AFR][1000 genomes]
rs2859361	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28318400-28350800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:28324400-28336000	Weak transcription	GM12878-XiMat	blood
3	chr6:28324400-28347600	Weak transcription	NHDF-Ad	bronchial
4	chr6:28324400-28347800	Weak transcription	Fetal Brain Male	brain
5	chr6:28324400-28348200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:28324400-28357200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:28324400-28357600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:28324600-28349400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:28324600-28349600	Weak transcription	NHEK	skin
10	chr6:28324600-28358600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:28324800-28341600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:28325400-28350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:28326800-28335400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:28326800-28336200	Strong transcription	Adipose Nuclei	Adipose
15	chr6:28327000-28336200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:28327000-28336200	Strong transcription	Fetal Stomach	stomach
17	chr6:28327000-28337600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:28327200-28335400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr6:28327200-28338400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:28327800-28335200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:28327800-28335600	Strong transcription	K562	blood
22	chr6:28328000-28337000	Strong transcription	Liver	Liver
23	chr6:28328200-28336800	Strong transcription	Fetal Muscle Leg	muscle
24	chr6:28330600-28335400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:28330800-28335200	Strong transcription	Left Ventricle	heart
26	chr6:28330800-28335400	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:28330800-28337600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:28330800-28338600	Strong transcription	Primary T cells from cord blood	blood
29	chr6:28331000-28335400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:28331200-28336600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:28331200-28337600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:28331800-28335200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr6:28332000-28350600	Weak transcription	Psoas Muscle	Psoas
34	chr6:28333400-28335200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:28333800-28345800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:28333800-28347800	Weak transcription	HUVEC	blood vessel
37	chr6:28333800-28348000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:28333800-28349800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:28333800-28349800	Weak transcription	Pancreas	Pancrea
40	chr6:28333800-28350800	Weak transcription	Lung	lung
41	chr6:28333800-28351000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:28334000-28335800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:28334000-28335800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr6:28334000-28338200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:28334000-28338400	Weak transcription	Fetal Brain Female	brain
46	chr6:28334000-28345600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:28334000-28346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:28334000-28346800	Weak transcription	Fetal Kidney	kidney
49	chr6:28334000-28348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:28334000-28350000	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links