The 2.0 version of rSNPBase

Variant report

Variant rs213229
Chromosome Location chr6:28330687-28330688
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:28318400-28332000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr6:28318400-28350800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr6:28324200-28331600 Weak transcription Thymus Thymus
4 chr6:28324400-28330800 Weak transcription Brain Substantia Nigra brain
5 chr6:28324400-28331000 Weak transcription Psoas Muscle Psoas
6 chr6:28324400-28331000 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr6:28324400-28331200 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr6:28324400-28331600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr6:28324400-28332600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr6:28324400-28333000 Weak transcription Primary T killer naive cells fromperipheralblood blood
11 chr6:28324400-28333000 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr6:28324400-28333200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr6:28324400-28336000 Weak transcription GM12878-XiMat blood
14 chr6:28324400-28347600 Weak transcription NHDF-Ad bronchial
15 chr6:28324400-28347800 Weak transcription Fetal Brain Male brain
16 chr6:28324400-28348200 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr6:28324400-28357200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr6:28324400-28357600 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr6:28324600-28330800 Weak transcription H9 Cell Line embryonic stem cell
20 chr6:28324600-28330800 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr6:28324600-28330800 Weak transcription Brain Cingulate Gyrus brain
22 chr6:28324600-28330800 Weak transcription Colonic Mucosa Colon
23 chr6:28324600-28330800 Weak transcription Left Ventricle heart
24 chr6:28324600-28331000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr6:28324600-28331000 Weak transcription Spleen Spleen
26 chr6:28324600-28331200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr6:28324600-28331200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr6:28324600-28331200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr6:28324600-28331200 Weak transcription Brain Inferior Temporal Lobe brain
30 chr6:28324600-28331600 Weak transcription Fetal Kidney kidney
31 chr6:28324600-28331800 Weak transcription Duodenum Mucosa Duodenum
32 chr6:28324600-28332000 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr6:28324600-28332600 Weak transcription H1 Cell Line embryonic stem cell
34 chr6:28324600-28332600 Weak transcription Brain Angular Gyrus brain
35 chr6:28324600-28332600 Weak transcription HSMM muscle
36 chr6:28324600-28332800 Weak transcription Fetal Heart heart
37 chr6:28324600-28349400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr6:28324600-28349600 Weak transcription NHEK skin
39 chr6:28324600-28358600 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr6:28324800-28331000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
41 chr6:28324800-28331000 Weak transcription Ovary ovary
42 chr6:28324800-28331200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr6:28324800-28331800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr6:28324800-28332000 Weak transcription Esophagus oesophagus
45 chr6:28324800-28341600 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr6:28325000-28330800 Weak transcription Primary B cells from peripheral blood blood
47 chr6:28325000-28330800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr6:28325000-28331400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr6:28325000-28331800 Weak transcription NHLF lung
50 chr6:28325000-28332200 Weak transcription HepG2 liver

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Last update: Aug 31, 2015