Variant report
| Variant | rs2859361 |
|---|---|
| Chromosome Location | chr6:28375607-28375608 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ESR1 | chr6:28375482-28375735 | ECC-1 | luminal epithelium: | n/a | chr6:28375604-28375619 |
| 2 | ESR1 | chr6:28375358-28375748 | ECC-1 | luminal epithelium: | n/a | chr6:28375604-28375619 |
| 3 | ESR1 | chr6:28375381-28375689 | ECC-1 | luminal epithelium: | n/a | chr6:28375604-28375619 |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27836090..27837594-chr6:28374724..28377447,2 | K562 | blood: | |
| 2 | chr6:28372326..28375748-chr6:28455628..28458983,4 | K562 | blood: | |
| 3 | chr6:28373595..28375831-chr6:28378815..28380474,2 | K562 | blood: | |
| 4 | chr6:28364231..28371937-chr6:28372195..28378158,17 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU2-45P | TF binding region |
| ENSG00000158691 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1144707 | 1.00[AMR][1000 genomes] |
| rs1150675 | 1.00[AMR][1000 genomes] |
| rs1150677 | 1.00[AMR][1000 genomes] |
| rs1150681 | 1.00[AMR][1000 genomes] |
| rs1150706 | 1.00[AMR][1000 genomes] |
| rs12208060 | 1.00[AMR][1000 genomes] |
| rs1225589 | 1.00[AMR][1000 genomes] |
| rs1225601 | 1.00[AMR][1000 genomes] |
| rs1233663 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs1233668 | 1.00[AMR][1000 genomes] |
| rs1778485 | 1.00[AMR][1000 genomes] |
| rs213229 | 1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs213234 | 1.00[AMR][1000 genomes] |
| rs213242 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2394048 | 1.00[AMR][1000 genomes] |
| rs2531829 | 1.00[AMR][1000 genomes] |
| rs2743874 | 1.00[YRI][hapmap] |
| rs2799080 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs2859357 | 1.00[YRI][hapmap] |
| rs2859366 | 1.00[AMR][1000 genomes] |
| rs4713154 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7744993 | 1.00[AFR][1000 genomes] |
| rs853675 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs853677 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs853680 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs853686 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs853691 | 1.00[AMR][1000 genomes] |
| rs853692 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28371200-28410400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr6:28374000-28377200 | Enhancers | K562 | blood |
