Variant report
| Variant | rs1233668 |
|---|---|
| Chromosome Location | chr6:28144642-28144643 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000176933 | Chromatin interaction |
| ENSG00000238610 | Chromatin interaction |
| ENSG00000226314 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1144707 | 1.00[AMR][1000 genomes] |
| rs1150667 | 1.00[AMR][1000 genomes] |
| rs1150675 | 1.00[AMR][1000 genomes] |
| rs1150677 | 1.00[AMR][1000 genomes] |
| rs1150681 | 1.00[AMR][1000 genomes] |
| rs1150706 | 1.00[AMR][1000 genomes] |
| rs12208060 | 1.00[AMR][1000 genomes] |
| rs1225589 | 1.00[AMR][1000 genomes] |
| rs1225601 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1233663 | 1.00[AMR][1000 genomes] |
| rs1778485 | 1.00[AMR][1000 genomes] |
| rs213229 | 1.00[AMR][1000 genomes] |
| rs213234 | 1.00[AMR][1000 genomes] |
| rs213242 | 1.00[AMR][1000 genomes] |
| rs2394048 | 1.00[AMR][1000 genomes] |
| rs2531829 | 1.00[AMR][1000 genomes] |
| rs2799080 | 1.00[AMR][1000 genomes] |
| rs2859361 | 1.00[AMR][1000 genomes] |
| rs4713154 | 1.00[AMR][1000 genomes] |
| rs59183152 | 1.00[AMR][1000 genomes] |
| rs6902266 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7740205 | 0.91[AFR][1000 genomes] |
| rs7747984 | 0.91[AFR][1000 genomes] |
| rs7760347 | 0.91[AFR][1000 genomes] |
| rs7769304 | 0.91[AFR][1000 genomes] |
| rs853675 | 1.00[AMR][1000 genomes] |
| rs853677 | 1.00[AMR][1000 genomes] |
| rs853680 | 1.00[AMR][1000 genomes] |
| rs853686 | 1.00[AMR][1000 genomes] |
| rs853691 | 1.00[AMR][1000 genomes] |
| rs853692 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3384757 | chr6:28143357-28145067 | Weak transcription | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28129800-28145400 | Weak transcription | Brain Angular Gyrus | brain |
| 2 | chr6:28138000-28145600 | Weak transcription | K562 | blood |
| 3 | chr6:28139400-28145600 | Weak transcription | Brain Inferior Temporal Lobe | brain |
