Variant report

Variant	rs7740205
Chromosome Location	chr6:28311381-28311382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000235109	Chromatin interaction
ENSG00000158691	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000189298	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1225601	0.91[AFR][1000 genomes]
rs1233668	0.91[AFR][1000 genomes]
rs35454169	1.00[AFR][1000 genomes]
rs41270591	0.83[AFR][1000 genomes]
rs6922986	1.00[AFR][1000 genomes]
rs6935046	1.00[AFR][1000 genomes]
rs6940523	1.00[AFR][1000 genomes]
rs7747984	1.00[AFR][1000 genomes]
rs7760347	1.00[AFR][1000 genomes]
rs7769304	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28304400-28317400	Weak transcription	Pancreas	Pancrea
2	chr6:28304800-28317200	Weak transcription	Aorta	Aorta
3	chr6:28305000-28317200	Weak transcription	Brain Anterior Caudate	brain
4	chr6:28305000-28317200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:28305200-28311800	Weak transcription	Brain Angular Gyrus	brain
6	chr6:28305200-28313800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:28305200-28317000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:28305200-28317000	Weak transcription	NHEK	skin
9	chr6:28305200-28317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:28305200-28317200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:28305200-28317200	Weak transcription	HSMMtube	muscle
12	chr6:28305800-28317200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:28309400-28314800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:28310000-28312200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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