Variant report

Variant	rs7747984
Chromosome Location	chr6:28314303-28314304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28232695..28235468-chr6:28312123..28315031,2	K562	blood:
2	chr6:28301955..28305314-chr6:28311630..28316587,6	MCF-7	breast:
3	chr6:28241790..28245187-chr6:28314070..28316476,3	K562	blood:
4	chr6:28302467..28305224-chr6:28310834..28314742,3	MCF-7	breast:
5	chr6:28192916..28194526-chr6:28313827..28315700,2	K562	blood:
6	chr6:28307801..28310523-chr6:28312557..28314569,2	MCF-7	breast:
7	chr6:28112424..28114351-chr6:28312409..28315217,2	K562	blood:
8	chr6:28283987..28285681-chr6:28312968..28315468,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1225601	0.91[AFR][1000 genomes]
rs1233668	0.91[AFR][1000 genomes]
rs35454169	1.00[AFR][1000 genomes]
rs41270591	0.83[AFR][1000 genomes]
rs6922986	1.00[AFR][1000 genomes]
rs6935046	1.00[AFR][1000 genomes]
rs6940523	1.00[AFR][1000 genomes]
rs7740205	1.00[AFR][1000 genomes]
rs7760347	1.00[AFR][1000 genomes]
rs7769304	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28304400-28317400	Weak transcription	Pancreas	Pancrea
2	chr6:28304800-28317200	Weak transcription	Aorta	Aorta
3	chr6:28305000-28317200	Weak transcription	Brain Anterior Caudate	brain
4	chr6:28305000-28317200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:28305200-28317000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:28305200-28317000	Weak transcription	NHEK	skin
7	chr6:28305200-28317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:28305200-28317200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:28305200-28317200	Weak transcription	HSMMtube	muscle
10	chr6:28305800-28317200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:28309400-28314800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:28313800-28314800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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