Variant report

Variant	rs6902266
Chromosome Location	chr6:28032910-28032911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1144707	1.00[AMR][1000 genomes]
rs1150667	1.00[AMR][1000 genomes]
rs1150675	1.00[AMR][1000 genomes]
rs1150677	1.00[AMR][1000 genomes]
rs1150681	1.00[AMR][1000 genomes]
rs1150706	1.00[AMR][1000 genomes]
rs1225589	1.00[AMR][1000 genomes]
rs1225601	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1233663	1.00[AMR][1000 genomes]
rs1233668	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs172083	1.00[AMR][1000 genomes]
rs1778485	1.00[AMR][1000 genomes]
rs200945	1.00[AMR][1000 genomes]
rs200946	1.00[AMR][1000 genomes]
rs200957	1.00[AMR][1000 genomes]
rs200960	1.00[AMR][1000 genomes]
rs2394048	1.00[AMR][1000 genomes]
rs2799080	1.00[AMR][1000 genomes]
rs4713154	1.00[AMR][1000 genomes]
rs59183152	1.00[AMR][1000 genomes]
rs602717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv883513	chr6:27982152-28033087	Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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