Variant report

Variant	rs1150677
Chromosome Location	chr6:28140134-28140135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr6:28140032-28140231	Hela-S3	cervix:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28139929..28141962-chr6:28142332..28144610,2	K562	blood:
2	chr6:28139078..28141804-chr6:28165060..28166721,2	K562	blood:
3	chr6:28130107..28132754-chr6:28139085..28141049,2	K562	blood:
4	chr6:28135297..28137583-chr6:28137642..28140469,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF192-3	chr6:28138623-28140299	NONHSAT108445

No data

Variant related genes	Relation type
ENSG00000216901	TF binding region
ENSG00000226314	Chromatin interaction
ENSG00000216901	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1144707	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150667	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs1150675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150706	1.00[AMR][1000 genomes]
rs12208060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225589	1.00[AMR][1000 genomes]
rs1225601	1.00[AMR][1000 genomes]
rs1233663	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1233668	1.00[AMR][1000 genomes]
rs1778485	1.00[AMR][1000 genomes]
rs200960	1.00[AMR][1000 genomes]
rs213229	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs213234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213242	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2394048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2743874	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2799080	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2859361	1.00[AMR][1000 genomes]
rs4713154	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59183152	1.00[AMR][1000 genomes]
rs6902266	1.00[AMR][1000 genomes]
rs853675	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs853677	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs853680	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs853686	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs853691	1.00[AMR][1000 genomes]
rs853692	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28129800-28142200	Weak transcription	Aorta	Aorta
2	chr6:28129800-28145400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:28130000-28141400	Weak transcription	Right Ventricle	heart
4	chr6:28130000-28142600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:28130200-28140600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:28130200-28141800	Weak transcription	Fetal Kidney	kidney
7	chr6:28130200-28142800	Weak transcription	Left Ventricle	heart
8	chr6:28130400-28140200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:28130400-28140800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:28130400-28142600	Weak transcription	Psoas Muscle	Psoas
11	chr6:28130600-28141800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:28133600-28140800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:28135600-28140200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:28135800-28141600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:28137400-28140800	Strong transcription	Brain Cingulate Gyrus	brain
16	chr6:28138000-28145600	Weak transcription	K562	blood
17	chr6:28138800-28141000	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:28139000-28144400	Weak transcription	Brain Anterior Caudate	brain
19	chr6:28139400-28141800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:28139400-28145600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:28139800-28140200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:28140000-28140400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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