Variant report

Variant	rs2531829
Chromosome Location	chr6:28379239-28379240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1150675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1150706	1.00[AMR][1000 genomes]
rs12208060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1225589	1.00[AMR][1000 genomes]
rs1233663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1233668	1.00[AMR][1000 genomes]
rs1778485	1.00[AMR][1000 genomes]
rs213229	1.00[AMR][1000 genomes]
rs213234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213242	1.00[AMR][1000 genomes]
rs2394048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2799080	1.00[AMR][1000 genomes]
rs2859361	1.00[AMR][1000 genomes]
rs2859366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4713154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs853675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs853677	1.00[AMR][1000 genomes]
rs853680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs853686	1.00[AMR][1000 genomes]
rs853691	1.00[AMR][1000 genomes]
rs853692	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836974	chr6:28376981-28398748	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28371200-28410400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:28377000-28386600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:28377600-28390200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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