Variant report

Variant	rs7747880
Chromosome Location	chr6:81227771-81227772
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10452562	1.00[EUR][1000 genomes]
rs1377981	1.00[EUR][1000 genomes]
rs16891800	1.00[EUR][1000 genomes]
rs1836960	1.00[EUR][1000 genomes]
rs4498303	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4562096	1.00[EUR][1000 genomes]
rs4583942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56384135	1.00[EUR][1000 genomes]
rs56792199	1.00[EUR][1000 genomes]
rs57987456	1.00[EUR][1000 genomes]
rs61163277	1.00[EUR][1000 genomes]
rs6454160	1.00[EUR][1000 genomes]
rs6454173	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6902405	1.00[EUR][1000 genomes]
rs6928467	1.00[EUR][1000 genomes]
rs6933538	1.00[EUR][1000 genomes]
rs6938082	1.00[EUR][1000 genomes]
rs73471450	1.00[EUR][1000 genomes]
rs73471494	1.00[EUR][1000 genomes]
rs73471501	1.00[EUR][1000 genomes]
rs73473428	1.00[EUR][1000 genomes]
rs73473435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73475610	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73481828	1.00[EUR][1000 genomes]
rs73748607	1.00[EUR][1000 genomes]
rs73748610	1.00[EUR][1000 genomes]
rs73748616	1.00[EUR][1000 genomes]
rs7747214	1.00[EUR][1000 genomes]
rs7756784	1.00[EUR][1000 genomes]
rs7768308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768835	1.00[EUR][1000 genomes]
rs7772770	1.00[EUR][1000 genomes]
rs7773470	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81226200-81227800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:81226800-81230000	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:81227000-81232800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:81227200-81229400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:81227200-81232600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:81227400-81227800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:81227600-81231800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:81227600-81231800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:81227600-81231800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:81227600-81232800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links