Variant report

Variant	rs7748318
Chromosome Location	chr6:36333626-36333627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36328287..36330721-chr6:36332773..36335473,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7745457	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470259	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36319800-36334200	Weak transcription	Gastric	stomach
2	chr6:36326600-36334600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
4	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
5	chr6:36328400-36335400	Weak transcription	Aorta	Aorta
6	chr6:36328400-36338200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:36328400-36338800	Weak transcription	Esophagus	oesophagus
8	chr6:36328400-36341400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:36328400-36345600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:36328400-36351200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:36328600-36342800	Weak transcription	Ovary	ovary
13	chr6:36328800-36336200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:36328800-36336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:36331400-36336800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:36331400-36338800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:36332400-36333800	Enhancers	Stomach Mucosa	stomach
19	chr6:36332400-36334600	Enhancers	Fetal Intestine Large	intestine
20	chr6:36332400-36334800	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:36332800-36333800	Enhancers	Primary B cells from cord blood	blood
22	chr6:36333000-36333800	Enhancers	HepG2	liver
23	chr6:36333200-36334200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:36333200-36334400	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:36333200-36334400	Genic enhancers	Fetal Intestine Small	intestine
26	chr6:36333200-36335000	Enhancers	GM12878-XiMat	blood
27	chr6:36333200-36336400	Weak transcription	Osteobl	bone
28	chr6:36333200-36337000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:36333200-36338800	Weak transcription	Spleen	Spleen
30	chr6:36333200-36339000	Weak transcription	Lung	lung
31	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
32	chr6:36333400-36334800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:36333400-36335200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:36333600-36336800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:36333600-36337000	Weak transcription	Fetal Thymus	thymus

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