Variant report

Variant	rs9470259
Chromosome Location	chr6:36336043-36336044
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36334277..36337187-chr6:36562769..36565035,2	MCF-7	breast:
2	chr6:36335889..36338776-chr6:36453951..36455845,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7745457	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748318	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470260	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36338200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:36328400-36338800	Weak transcription	Esophagus	oesophagus
5	chr6:36328400-36341400	Weak transcription	Brain Anterior Caudate	brain
6	chr6:36328400-36345600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:36328400-36351200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:36328600-36342800	Weak transcription	Ovary	ovary
10	chr6:36328800-36336200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:36328800-36336800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:36331400-36336800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:36331400-36338800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:36333200-36336400	Weak transcription	Osteobl	bone
16	chr6:36333200-36337000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:36333200-36338800	Weak transcription	Spleen	Spleen
18	chr6:36333200-36339000	Weak transcription	Lung	lung
19	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
20	chr6:36333600-36336800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:36333600-36337000	Weak transcription	Fetal Thymus	thymus
22	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
23	chr6:36334200-36336400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:36334400-36345600	Strong transcription	Fetal Intestine Small	intestine
25	chr6:36334600-36336600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:36334600-36337200	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:36334600-36344200	Weak transcription	Fetal Intestine Large	intestine
28	chr6:36334600-36351000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:36334800-36336800	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:36335000-36336200	Weak transcription	Primary B cells from cord blood	blood
31	chr6:36335000-36342000	Weak transcription	Colonic Mucosa	Colon
32	chr6:36335000-36343400	Weak transcription	GM12878-XiMat	blood
33	chr6:36335200-36338800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:36335200-36339200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:36335400-36337000	Strong transcription	Aorta	Aorta
36	chr6:36335800-36336200	Weak transcription	Gastric	stomach

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