Variant report

Variant	rs7748469
Chromosome Location	chr6:46131001-46131002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1048076	0.83[EUR][1000 genomes]
rs1048082	0.83[EUR][1000 genomes]
rs1048083	0.83[EUR][1000 genomes]
rs10807334	0.81[EUR][1000 genomes]
rs10948283	0.82[EUR][1000 genomes]
rs11754760	0.81[EUR][1000 genomes]
rs12196107	0.83[EUR][1000 genomes]
rs12215921	0.83[EUR][1000 genomes]
rs12526912	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13210366	0.81[EUR][1000 genomes]
rs14781	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2143747	0.83[EUR][1000 genomes]
rs2179760	0.83[EUR][1000 genomes]
rs2206965	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206968	0.82[EUR][1000 genomes]
rs2223777	0.82[EUR][1000 genomes]
rs2223778	0.82[EUR][1000 genomes]
rs2235881	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2235883	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2894662	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3756802	0.82[EUR][1000 genomes]
rs3756803	0.82[EUR][1000 genomes]
rs3777634	0.83[EUR][1000 genomes]
rs3806994	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3806995	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3905440	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6458490	0.83[EUR][1000 genomes]
rs6458491	0.83[EUR][1000 genomes]
rs6923745	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6926570	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6930766	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71566566	0.82[EUR][1000 genomes]
rs7357078	0.83[EUR][1000 genomes]
rs7451713	0.83[EUR][1000 genomes]
rs7748442	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7769738	0.83[EUR][1000 genomes]
rs7769902	0.83[EUR][1000 genomes]
rs7770384	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7775082	0.82[EUR][1000 genomes]
rs8180644	0.82[EUR][1000 genomes]
rs872859	0.83[EUR][1000 genomes]
rs910179	0.83[EUR][1000 genomes]
rs9349348	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9357500	0.82[EUR][1000 genomes]
rs9357501	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9367234	0.80[EUR][1000 genomes]
rs9367237	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9369599	0.82[EUR][1000 genomes]
rs9369600	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9381430	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9395158	0.83[EUR][1000 genomes]
rs9395159	0.83[EUR][1000 genomes]
rs9463185	0.83[EUR][1000 genomes]
rs9472698	0.82[EUR][1000 genomes]
rs9472700	0.83[EUR][1000 genomes]
rs9472704	0.83[EUR][1000 genomes]
rs9472707	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9472708	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472709	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472713	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9472715	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs995564	0.82[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46105400-46133800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:46105600-46137400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:46106400-46138000	Weak transcription	Lung	lung
4	chr6:46111400-46137800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:46111600-46138000	Weak transcription	Fetal Thymus	thymus
6	chr6:46122800-46138000	Weak transcription	Pancreas	Pancrea
7	chr6:46123400-46137600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:46123800-46138000	Weak transcription	Fetal Brain Male	brain
9	chr6:46124000-46137400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:46124600-46137600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:46124800-46137800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:46126000-46138000	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:46126200-46137800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:46126200-46138000	Weak transcription	Fetal Intestine Large	intestine
15	chr6:46126400-46137800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:46127000-46138000	Weak transcription	Ovary	ovary
17	chr6:46127200-46137800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:46127400-46137800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:46127600-46137600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:46127600-46137600	Weak transcription	Fetal Kidney	kidney
21	chr6:46128000-46132200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:46129400-46132800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:46129400-46137800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:46129400-46138000	Weak transcription	Aorta	Aorta
25	chr6:46129600-46137600	Weak transcription	Brain Anterior Caudate	brain
26	chr6:46129600-46137800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:46129600-46138000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:46129800-46137400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:46129800-46138000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:46130200-46132800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:46130400-46134600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr6:46130400-46134800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:46130400-46137600	Weak transcription	Brain Angular Gyrus	brain
34	chr6:46130400-46137800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr6:46130400-46137800	Weak transcription	Brain Substantia Nigra	brain
36	chr6:46130600-46132000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:46130600-46138000	Weak transcription	Primary T cells from cord blood	blood
38	chr6:46130800-46135200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:46131000-46131800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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