Variant report

Variant	rs7769738
Chromosome Location	chr6:46110726-46110727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46110640..46112825-chr6:46112958..46115144,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1011370	0.83[CEU][hapmap]
rs1048076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048079	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1048082	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048083	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1076736	1.00[YRI][hapmap]
rs1076737	1.00[YRI][hapmap]
rs1076738	0.82[CEU][hapmap]
rs10807334	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10948283	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11754760	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12215921	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526912	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13210366	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs14781	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2179760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206965	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2206968	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2223777	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2223778	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2235881	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2235883	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2295016	0.81[AFR][1000 genomes]
rs2295017	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2295018	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2894662	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756802	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3756803	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3777634	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806994	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3806995	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3891763	0.81[AFR][1000 genomes]
rs3905440	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6458490	0.91[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6458492	0.81[AFR][1000 genomes]
rs6921826	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs6923745	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6926570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6930766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6941587	0.81[AFR][1000 genomes]
rs71566566	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7357078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7451713	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740398	1.00[YRI][hapmap]
rs7748442	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7748469	0.83[EUR][1000 genomes]
rs7754582	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7769902	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7773230	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7775082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180644	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs872859	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs910179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349348	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9357501	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357502	0.80[AFR][1000 genomes]
rs9367233	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9367234	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9367237	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369599	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9369600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9369601	0.81[AFR][1000 genomes]
rs9381430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9395158	0.87[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9395159	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9463185	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472694	0.83[AMR][1000 genomes]
rs9472698	0.83[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472699	0.83[AFR][1000 genomes]
rs9472700	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472704	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9472705	0.80[AFR][1000 genomes]
rs9472707	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9472708	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9472709	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9472713	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9472714	1.00[YRI][hapmap]
rs9472715	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs995564	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022912	chr6:46093409-46116449	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7769738	ENPP5	cis	Thyroid	GTEx

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46098800-46110800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:46098800-46111600	Weak transcription	Right Ventricle	heart
3	chr6:46098800-46112400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:46098800-46112800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:46098800-46112800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:46098800-46112800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:46098800-46113000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:46098800-46117800	Weak transcription	Gastric	stomach
9	chr6:46098800-46129000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:46101600-46111800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:46101600-46112000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:46101800-46112000	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:46101800-46113000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:46102200-46113000	Weak transcription	Fetal Intestine Large	intestine
15	chr6:46105000-46114600	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:46105400-46115000	Weak transcription	Aorta	Aorta
17	chr6:46105400-46133800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:46105600-46113200	Weak transcription	Spleen	Spleen
19	chr6:46105600-46128600	Weak transcription	Brain Angular Gyrus	brain
20	chr6:46105600-46137400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:46105800-46112800	Weak transcription	HSMMtube	muscle
22	chr6:46106400-46111000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:46106400-46111600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:46106400-46112600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:46106400-46112800	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:46106400-46125400	Weak transcription	Psoas Muscle	Psoas
27	chr6:46106400-46138000	Weak transcription	Lung	lung
28	chr6:46106600-46111200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:46106600-46112800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:46106600-46112800	Weak transcription	Liver	Liver
31	chr6:46107600-46111400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr6:46107800-46114000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:46108000-46110800	Weak transcription	GM12878-XiMat	blood
34	chr6:46108000-46130000	Weak transcription	Brain Substantia Nigra	brain
35	chr6:46108800-46112600	Weak transcription	Ovary	ovary
36	chr6:46109000-46111200	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:46109200-46111400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:46109200-46111600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr6:46109200-46111800	Strong transcription	Primary B cells from peripheral blood	blood
40	chr6:46109600-46111200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:46109600-46111600	Strong transcription	Fetal Thymus	thymus
42	chr6:46109600-46112400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:46109800-46112000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:46109800-46112400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:46110000-46111000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:46110200-46111400	Strong transcription	Primary T cells from cord blood	blood
47	chr6:46110200-46111400	Strong transcription	Primary hematopoietic stem cells	blood
48	chr6:46110200-46112400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr6:46110400-46111400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:46110400-46111600	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links