Variant report

Variant	rs1011370
Chromosome Location	chr6:46142385-46142386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1047153	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1048076	0.82[CEU][hapmap]
rs1048077	0.84[CEU][hapmap]
rs1076738	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12196107	0.83[CEU][hapmap]
rs14781	0.82[CEU][hapmap]
rs2143747	0.82[CEU][hapmap]
rs2179759	0.80[EUR][1000 genomes]
rs2179760	0.82[CEU][hapmap]
rs3756802	0.82[CEU][hapmap]
rs3806995	0.82[CEU][hapmap]
rs5011271	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6458491	0.82[CEU][hapmap]
rs6900403	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6921636	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6926570	0.82[CEU][hapmap]
rs6930766	0.82[CEU][hapmap]
rs7357078	0.82[CEU][hapmap]
rs7754915	0.81[CEU][hapmap]
rs7762549	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7766019	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs7769738	0.83[CEU][hapmap]
rs7770384	0.82[CEU][hapmap]
rs7775082	0.82[CEU][hapmap]
rs910179	0.82[CEU][hapmap]
rs9357500	0.82[CEU][hapmap]
rs9367235	0.86[CHB][hapmap]
rs9369597	0.81[CEU][hapmap]
rs9369598	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9369600	0.82[CEU][hapmap]
rs9381430	0.83[CEU][hapmap]
rs9395154	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9395156	0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap]
rs9472686	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9472701	0.83[ASN][1000 genomes]
rs9472703	0.83[ASN][1000 genomes]
rs9472712	0.92[ASN][1000 genomes]
rs995563	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs995564	0.82[CEU][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46139200-46143600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:46139200-46160800	Weak transcription	Aorta	Aorta
3	chr6:46139400-46142400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:46140600-46143800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:46141400-46142600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:46141400-46145400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:46141600-46142600	Enhancers	Brain Angular Gyrus	brain
8	chr6:46141600-46142600	Enhancers	Brain Substantia Nigra	brain
9	chr6:46141600-46144800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:46141800-46142400	Weak transcription	Psoas Muscle	Psoas
11	chr6:46141800-46144400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:46141800-46144400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:46142000-46142600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:46142000-46142600	Enhancers	Brain Anterior Caudate	brain
15	chr6:46142200-46142600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:46142200-46143200	Enhancers	GM12878-XiMat	blood
17	chr6:46142200-46144600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:46142200-46145400	Enhancers	Fetal Thymus	thymus

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