Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1011370	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1047153	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1048077	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs1076738	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs13210417	0.83[AMR][1000 genomes]
rs2143745	0.94[EUR][1000 genomes]
rs2206964	0.94[EUR][1000 genomes]
rs2223776	0.94[EUR][1000 genomes]
rs3734208	0.81[AMR][1000 genomes]
rs7754915	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs7760042	0.84[AMR][1000 genomes]
rs7766019	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs9367235	0.86[CHB][hapmap];0.84[AMR][1000 genomes]
rs9369597	0.88[CEU][hapmap]
rs9395156	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes]
rs9472701	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9472703	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9472712	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs978681	0.83[EUR][1000 genomes]
rs993632	0.82[AMR][1000 genomes]
rs995563	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs5011271	CRISP3	cis	parietal	SCAN
rs5011271	TJAP1	cis	parietal	SCAN
rs5011271	ENPP4	cis	parietal	SCAN
rs5011271	CLIC5	cis	parietal	SCAN
rs5011271	ENPP5	cis	cerebellum	SCAN
rs5011271	RHAG	cis	cerebellum	SCAN
rs5011271	ZNF318	cis	parietal	SCAN
rs5011271	ENPP5	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46139200-46143600	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:46139200-46160800	Weak transcription	Aorta	Aorta
3	chr6:46140600-46143800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:46141400-46142600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:46141400-46145400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:46141600-46142600	Enhancers	Brain Angular Gyrus	brain
7	chr6:46141600-46142600	Enhancers	Brain Substantia Nigra	brain
8	chr6:46141600-46144800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:46141800-46144400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:46141800-46144400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:46142000-46142600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:46142000-46142600	Enhancers	Brain Anterior Caudate	brain
13	chr6:46142200-46142600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr6:46142200-46143200	Enhancers	GM12878-XiMat	blood
15	chr6:46142200-46144600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:46142200-46145400	Enhancers	Fetal Thymus	thymus
17	chr6:46142400-46142600	Enhancers	Psoas Muscle	Psoas
18	chr6:46142400-46144600	Enhancers	Primary T cells from cord blood	blood
19	chr6:46142400-46144600	Enhancers	Thymus	Thymus

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